jwst.sh

#!/usr/bin/env bash
source ec2pinit.inc.sh
 
# Update system packages
sys_pkg_update_all
 
# Install additional packages
sys_pkg_install curl \
    gcc \
    git \
    sudo
 
# "become" the target user
sys_user_push ec2-user
 
miniconda_root=$HOME/miniconda3
miniconda_version="py39_4.12.0"
 
# Install miniconda
mc_install "$miniconda_version" "$miniconda_root"
 
# Configure miniconda for user
mc_initialize "$miniconda_root"
 
# Install JWST pipeline release
export CFLAGS="-std=gnu99"
ac_releases_install_jwst "1.5.2"
 
# Return to root user
sys_user_pop
 
# Reset target user's home directory permissions
sys_reset_home_ownership ec2-user